J4_4WQU_026

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4WQU|1|DA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_026 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0773

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WQU|1|DA|G|115
4WQU|1|DA|A|116
4WQU|1|DA|G|117
4WQU|1|DA|U|118
4WQU|1|DA|A|119
4WQU|1|DA|A|120
4WQU|1|DA|C|121
4WQU|1|DA|G|122
*
4WQU|1|DA|U|239
4WQU|1|DA|C|240
*
4WQU|1|DA|G|286
4WQU|1|DA|U|287
4WQU|1|DA|A|288
4WQU|1|DA|G|289
*
4WQU|1|DA|C|311
4WQU|1|DA|C|312

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DP

30S ribosomal protein S16

Chain DQ

30S ribosomal protein S17