J4_4WQY_002

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQY_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0543

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4WQY|1|AA|C|321
4WQY|1|AA|G|322
4WQY|1|AA|A|323
4WQY|1|AA|A|324
4WQY|1|AA|G|325
*
4WQY|1|AA|C|340
4WQY|1|AA|G|341
4WQY|1|AA|C|342
4WQY|1|AA|C|343
*
4WQY|1|AA|G|347
4WQY|1|AA|A|348
4WQY|1|AA|G|349
*
4WQY|1|AA|C|361
4WQY|1|AA|G|362
4WQY|1|AA|U|363
4WQY|1|AA|A|364
4WQY|1|AA|G|365

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AY

50S ribosomal protein L24