J4_4WQY_008

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WQY|1|AA|A|1993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQY_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0628

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4WQY|1|AA|U|1864
4WQY|1|AA|U|1865
4WQY|1|AA|G|1866
*
4WQY|1|AA|C|1927
4WQY|1|AA|G|1928
*
4WQY|1|AA|C|1946
4WQY|1|AA|C|1947
4WQY|1|AA|U|1948
4WQY|1|AA|A|1949
4WQY|1|AA|A|1950
4WQY|1|AA|G|1951
4WQY|1|AA|G|1952
4WQY|1|AA|U|1953
4WQY|1|AA|A|1954
4WQY|1|AA|G|1955
*
4WQY|1|AA|C|1989
4WQY|1|AA|G|1990
4WQY|1|AA|A|1991
4WQY|1|AA|A|1992
4WQY|1|AA|A|1993
4WQY|1|AA|A|1994

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BX

Transfer RNA; tRNA