J4_4WQY_018

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4WQY|1|CA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQY_018 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0591

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WQY|1|CA|G|1310
4WQY|1|CA|G|1311
4WQY|1|CA|U|1312
4WQY|1|CA|U|1313
4WQY|1|CA|C|1314
*
4WQY|1|CA|G|1338
4WQY|1|CA|G|1339
4WQY|1|CA|U|1340
4WQY|1|CA|U|1341
4WQY|1|CA|A|1342
4WQY|1|CA|G|1343
*
4WQY|1|CA|C|1404
4WQY|1|CA|U|1405
*
4WQY|1|CA|A|1597
4WQY|1|CA|C|1598
4WQY|1|CA|C|1599
4WQY|1|CA|C|1600
4WQY|1|CA|G|1601
4WQY|1|CA|U|1602
4WQY|1|CA|A|1603
4WQY|1|CA|C|1604

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CX

50S ribosomal protein L23