J4_4WRA_009

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4WRA|1|14|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WRA_009 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.1178

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WRA|1|14|U|1313
4WRA|1|14|C|1314
*
4WRA|1|14|G|1338
4WRA|1|14|G|1339
4WRA|1|14|U|1340
4WRA|1|14|U|1341
4WRA|1|14|A|1342
4WRA|1|14|G|1343
*
4WRA|1|14|C|1404
4WRA|1|14|U|1405
*
4WRA|1|14|A|1597
4WRA|1|14|C|1598
4WRA|1|14|C|1599
4WRA|1|14|C|1600
4WRA|1|14|G|1601
4WRA|1|14|U|1602
4WRA|1|14|A|1603

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23