J4_4WRA_018

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WRA|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WRA_018 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1604

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WRA|1|1H|C|268
4WRA|1|1H|U|269
*
4WRA|1|1H|G|370
4WRA|1|1H|A|371
4WRA|1|1H|G|372
4WRA|1|1H|U|373
4WRA|1|1H|A|374
4WRA|1|1H|C|375
*
4WRA|1|1H|G|399
4WRA|1|1H|G|400
4WRA|1|1H|A|401
4WRA|1|1H|A|402
4WRA|1|1H|U|403
4WRA|1|1H|C|404
4WRA|1|1H|U|405
4WRA|1|1H|G|406
*
4WRA|1|1H|U|421
4WRA|1|1H|A|422
4WRA|1|1H|A|423
4WRA|1|1H|G|424

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28