J4_4WSD_003
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4WSD|1|13|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WSD_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0485
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4WSD|1|13|G|575
4WSD|1|13|G|576
4WSD|1|13|G|577
*
4WSD|1|13|C|764
4WSD|1|13|G|765
4WSD|1|13|A|766
4WSD|1|13|A|767
4WSD|1|13|A|768
4WSD|1|13|G|769
*
4WSD|1|13|C|810
4WSD|1|13|C|811
4WSD|1|13|C|812
4WSD|1|13|U|813
4WSD|1|13|A|814
4WSD|1|13|A|815
4WSD|1|13|A|816
4WSD|1|13|C|817
4WSD|1|13|G|818
4WSD|1|13|A|819
4WSD|1|13|U|820
4WSD|1|13|G|821
*
4WSD|1|13|C|879
4WSD|1|13|C|880
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3I
- 30S ribosomal protein S12
- Chain 6I
- 30S ribosomal protein S15
- Chain 7E
- 30S ribosomal protein S8
- Chain 8I
- 30S ribosomal protein S17
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