J4_4WSD_009
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 4WSD|1|14|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WSD_009 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.1003
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WSD|1|14|U|1313
4WSD|1|14|C|1314
*
4WSD|1|14|G|1338
4WSD|1|14|G|1339
4WSD|1|14|U|1340
4WSD|1|14|U|1341
4WSD|1|14|A|1342
4WSD|1|14|G|1343
*
4WSD|1|14|C|1404
4WSD|1|14|U|1405
*
4WSD|1|14|A|1597
4WSD|1|14|C|1598
4WSD|1|14|C|1599
4WSD|1|14|C|1600
4WSD|1|14|G|1601
4WSD|1|14|U|1602
4WSD|1|14|A|1603
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L23
- Chain L5
- 50S ribosomal protein L34
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