J4_4WSD_014

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSD_014 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0949

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WSD|1|14|G|2643
4WSD|1|14|G|2644
4WSD|1|14|G|2645
4WSD|1|14|C|2646
*
4WSD|1|14|G|2674
4WSD|1|14|A|2675
4WSD|1|14|C|2676
*
4WSD|1|14|G|2731
4WSD|1|14|G|2732
4WSD|1|14|A|2733
4WSD|1|14|A|2734
4WSD|1|14|G|2735
*
4WSD|1|14|C|2769
4WSD|1|14|G|2770
4WSD|1|14|C|2771

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3