J4_4WSD_021

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4WSD|1|1H|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSD_021 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0786

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WSD|1|1H|G|1310
4WSD|1|1H|G|1311
4WSD|1|1H|U|1312
4WSD|1|1H|U|1313
4WSD|1|1H|C|1314
*
4WSD|1|1H|G|1338
4WSD|1|1H|G|1339
4WSD|1|1H|U|1340
4WSD|1|1H|U|1341
4WSD|1|1H|A|1342
4WSD|1|1H|G|1343
*
4WSD|1|1H|C|1404
4WSD|1|1H|U|1405
*
4WSD|1|1H|A|1597
4WSD|1|1H|C|1598
4WSD|1|1H|C|1599
4WSD|1|1H|C|1600
4WSD|1|1H|G|1601
4WSD|1|1H|U|1602
4WSD|1|1H|A|1603
4WSD|1|1H|C|1604

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34