J4_4WSD_029

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAUAG*CAG*CGUGUCCUU*GAGUC

Length

22 nucleotides

Bulged bases

4WSD|1|1L|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSD_029 not in the Motif Atlas

Homologous match to J4_6ORD_005

Geometric discrepancy: 0.4772

The information below is about J4_6ORD_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|1L|G|6
4WSD|1|1L|A|7
4WSD|1|1L|U|8
4WSD|1|1L|A|9
4WSD|1|1L|G|10
*
4WSD|1|1L|C|25
4WSD|1|1L|A|26
4WSD|1|1L|G|27
*
4WSD|1|1L|C|43
4WSD|1|1L|G|44
4WSD|1|1L|U|45
4WSD|1|1L|G|46
4WSD|1|1L|U|47
4WSD|1|1L|C|48
4WSD|1|1L|C|49
4WSD|1|1L|U|50
4WSD|1|1L|U|51
*
4WSD|1|1L|G|63
4WSD|1|1L|A|64
4WSD|1|1L|G|65
4WSD|1|1L|U|66
4WSD|1|1L|C|67

Current chains

Chain 1L

tRNA-Phe

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16