J4_4WSD_032

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

4WSD|1|3K|U|45, 4WSD|1|3K|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSD_032 not in the Motif Atlas

Homologous match to J4_2CSX_001

Geometric discrepancy: 0.555

The information below is about J4_2CSX_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4WSD|1|3K|A|7
4WSD|1|3K|U|8
4WSD|1|3K|A|9
4WSD|1|3K|G|10
*
4WSD|1|3K|C|25
4WSD|1|3K|A|26
4WSD|1|3K|G|27
*
4WSD|1|3K|C|43
4WSD|1|3K|G|44
4WSD|1|3K|U|45
4WSD|1|3K|G|46
4WSD|1|3K|U|47
4WSD|1|3K|C|48
4WSD|1|3K|C|49
*
4WSD|1|3K|G|65
4WSD|1|3K|U|66

Current chains

Chain 3K

tRNA-Phe

Nearby chains

Chain 2I

30S ribosomal protein S11

Chain 6E

30S ribosomal protein S7