J4_4WSM_014

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSM_014 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0925

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WSM|1|14|G|2643
4WSM|1|14|G|2644
4WSM|1|14|G|2645
4WSM|1|14|C|2646
*
4WSM|1|14|G|2674
4WSM|1|14|A|2675
4WSM|1|14|C|2676
*
4WSM|1|14|G|2731
4WSM|1|14|G|2732
4WSM|1|14|A|2733
4WSM|1|14|A|2734
4WSM|1|14|G|2735
*
4WSM|1|14|C|2769
4WSM|1|14|G|2770
4WSM|1|14|C|2771

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3