J4_4WSM_015

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4WSM|1|1G|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSM_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0756

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WSM|1|1G|G|115
4WSM|1|1G|A|116
4WSM|1|1G|G|117
4WSM|1|1G|U|118
4WSM|1|1G|A|119
4WSM|1|1G|A|120
4WSM|1|1G|C|121
4WSM|1|1G|G|122
*
4WSM|1|1G|U|239
4WSM|1|1G|C|240
*
4WSM|1|1G|G|286
4WSM|1|1G|U|287
4WSM|1|1G|A|288
4WSM|1|1G|G|289
*
4WSM|1|1G|C|311
4WSM|1|1G|C|312

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12

Chain 7A

30S ribosomal protein S16

Chain 8A

30S ribosomal protein S17