J4_4WSM_020

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4WSM|1|1H|G|1271, 4WSM|1|1H|A|1272, 4WSM|1|1H|U|1273, 4WSM|1|1H|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSM_020 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.063

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WSM|1|1H|C|1270
4WSM|1|1H|G|1271
4WSM|1|1H|A|1272
4WSM|1|1H|U|1273
4WSM|1|1H|A|1274
4WSM|1|1H|A|1275
4WSM|1|1H|A|1276
*
4WSM|1|1H|U|1294
4WSM|1|1H|C|1295
*
4WSM|1|1H|G|1645
4WSM|1|1H|C|1646
4WSM|1|1H|G|1647
4WSM|1|1H|C|1648
*
4WSM|1|1H|G|2009
4WSM|1|1H|G|2010

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 98

50S ribosomal protein L17

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32