J4_4WSM_023

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4WSM|1|1H|A|1444|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSM_023 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.1139

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WSM|1|1H|G|1444
4WSM|1|1H|A|1444|||A
4WSM|1|1H|C|1445
*
4WSM|1|1H|G|1466
4WSM|1|1H|C|1467
*
4WSM|1|1H|G|1525
4WSM|1|1H|G|1526
*
4WSM|1|1H|C|1546
4WSM|1|1H|C|1547

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains