J4_4WT1_001

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4WT1|1|13|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT1_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0879

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WT1|1|13|G|115
4WT1|1|13|A|116
4WT1|1|13|G|117
4WT1|1|13|U|118
4WT1|1|13|A|119
4WT1|1|13|A|120
4WT1|1|13|C|121
4WT1|1|13|G|122
*
4WT1|1|13|U|239
4WT1|1|13|C|240
*
4WT1|1|13|G|286
4WT1|1|13|U|287
4WT1|1|13|A|288
4WT1|1|13|G|289
*
4WT1|1|13|C|311
4WT1|1|13|C|312

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3I

30S ribosomal protein S12

Chain 7I

30S ribosomal protein S16

Chain 8I

30S ribosomal protein S17