J4_4WT1_004

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WT1|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT1_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1075

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WT1|1|14|C|268
4WT1|1|14|U|269
*
4WT1|1|14|G|370
4WT1|1|14|A|371
4WT1|1|14|G|372
4WT1|1|14|U|373
4WT1|1|14|A|374
4WT1|1|14|C|375
*
4WT1|1|14|G|399
4WT1|1|14|G|400
4WT1|1|14|A|401
4WT1|1|14|A|402
4WT1|1|14|U|403
4WT1|1|14|C|404
4WT1|1|14|U|405
4WT1|1|14|G|406
*
4WT1|1|14|U|421
4WT1|1|14|A|422
4WT1|1|14|A|423
4WT1|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28