J4_4WT8_011

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4WT8|1|C1|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_011 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1213

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WT8|1|C1|U|1358
4WT8|1|C1|C|1359
*
4WT8|1|C1|G|1383
4WT8|1|C1|G|1384
4WT8|1|C1|U|1385
4WT8|1|C1|U|1386
4WT8|1|C1|A|1387
4WT8|1|C1|G|1388
*
4WT8|1|C1|C|1449
4WT8|1|C1|U|1450
*
4WT8|1|C1|A|1642
4WT8|1|C1|C|1643
4WT8|1|C1|C|1644
4WT8|1|C1|C|1645
4WT8|1|C1|G|1646
4WT8|1|C1|U|1647
4WT8|1|C1|A|1648

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C8

50S ribosomal protein L34

Chain CX

50S ribosomal protein L23