J4_4WT8_026

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WT8|1|D1|A|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_026 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1054

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WT8|1|D1|U|1863
4WT8|1|D1|U|1864
4WT8|1|D1|G|1865
*
4WT8|1|D1|C|1926
4WT8|1|D1|G|1927
*
4WT8|1|D1|C|1945
4WT8|1|D1|C|1946
4WT8|1|D1|U|1947
4WT8|1|D1|A|1948
4WT8|1|D1|A|1949
4WT8|1|D1|G|1950
4WT8|1|D1|G|1951
4WT8|1|D1|U|1952
4WT8|1|D1|A|1953
4WT8|1|D1|G|1954
*
4WT8|1|D1|C|1988
4WT8|1|D1|G|1989
4WT8|1|D1|A|1990
4WT8|1|D1|A|1991
4WT8|1|D1|A|1992
4WT8|1|D1|A|1993

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain Bb

Small subunit ribosomal RNA; SSU rRNA

Chain D4

Transfer RNA; tRNA

Chain DB

50S ribosomal protein L2