J4_4WU1_004

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WU1|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WU1_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0777

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WU1|1|14|C|268
4WU1|1|14|U|269
*
4WU1|1|14|G|370
4WU1|1|14|A|371
4WU1|1|14|G|372
4WU1|1|14|U|373
4WU1|1|14|A|374
4WU1|1|14|C|375
*
4WU1|1|14|G|399
4WU1|1|14|G|400
4WU1|1|14|A|401
4WU1|1|14|A|402
4WU1|1|14|U|403
4WU1|1|14|C|404
4WU1|1|14|U|405
4WU1|1|14|G|406
*
4WU1|1|14|U|421
4WU1|1|14|A|422
4WU1|1|14|A|423
4WU1|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28