J4_4WWW_005

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WWW_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0564

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4WWW|1|RA|G|297
4WWW|1|RA|G|298
4WWW|1|RA|A|299
4WWW|1|RA|A|300
4WWW|1|RA|G|301
*
4WWW|1|RA|C|316
4WWW|1|RA|G|317
4WWW|1|RA|C|318
4WWW|1|RA|G|319
*
4WWW|1|RA|C|323
4WWW|1|RA|A|324
4WWW|1|RA|G|325
*
4WWW|1|RA|C|337
4WWW|1|RA|G|338
4WWW|1|RA|U|339
4WWW|1|RA|A|340
4WWW|1|RA|C|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L4

Chain RU

50S ribosomal protein L24