J4_4WWW_006
3D structure
- PDB id
- 4WWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to CEM-101
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 4WWW|1|RA|U|653, 4WWW|1|RA|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WWW_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.0821
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4WWW|1|RA|C|601
4WWW|1|RA|A|602
4WWW|1|RA|A|603
4WWW|1|RA|G|604
*
4WWW|1|RA|C|624
4WWW|1|RA|G|625
4WWW|1|RA|A|626
4WWW|1|RA|A|627
4WWW|1|RA|G|628
*
4WWW|1|RA|C|635
4WWW|1|RA|G|636
4WWW|1|RA|A|637
4WWW|1|RA|G|638
*
4WWW|1|RA|C|650
4WWW|1|RA|G|651
4WWW|1|RA|U|652
4WWW|1|RA|U|653
4WWW|1|RA|A|654
4WWW|1|RA|A|655
4WWW|1|RA|G|656
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R3
- 50S ribosomal protein L35
- Chain RE
- 50S ribosomal protein L4
- Chain RL
- 50S ribosomal protein L15
Coloring options: