J4_4WWW_008

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4WWW|1|RA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WWW_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0729

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WWW|1|RA|G|1310
4WWW|1|RA|G|1311
4WWW|1|RA|U|1312
4WWW|1|RA|U|1313
4WWW|1|RA|C|1314
*
4WWW|1|RA|G|1338
4WWW|1|RA|G|1339
4WWW|1|RA|U|1340
4WWW|1|RA|G|1341
4WWW|1|RA|A|1342
4WWW|1|RA|G|1343
*
4WWW|1|RA|C|1404
4WWW|1|RA|U|1405
*
4WWW|1|RA|A|1597
4WWW|1|RA|A|1598
4WWW|1|RA|U|1599
4WWW|1|RA|C|1600
4WWW|1|RA|G|1601
4WWW|1|RA|U|1602
4WWW|1|RA|A|1603
4WWW|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R2

50S ribosomal protein L34

Chain RT

50S ribosomal protein L23