J4_4WWW_024

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UU*ACGAG*UGAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WWW_024 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.3191

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4WWW|1|YA|G|1444
4WWW|1|YA|G|1445
*
4WWW|1|YA|U|1466
4WWW|1|YA|U|1467
*
4WWW|1|YA|A|1525
4WWW|1|YA|C|1526
4WWW|1|YA|G|1527
4WWW|1|YA|A|1528
4WWW|1|YA|G|1529
*
4WWW|1|YA|U|1542
4WWW|1|YA|G|1543
4WWW|1|YA|A|1544
4WWW|1|YA|A|1545
4WWW|1|YA|G|1546
4WWW|1|YA|C|1547

Current chains

Chain YA

23S rRNA

Nearby chains