J4_4WWW_026
3D structure
- PDB id
- 4WWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to CEM-101
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 4WWW|1|YA|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WWW_026 not in the Motif Atlas
- Homologous match to J4_5J7L_026
- Geometric discrepancy: 0.0864
- The information below is about J4_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4WWW|1|YA|C|1833
4WWW|1|YA|U|1834
4WWW|1|YA|G|1835
*
4WWW|1|YA|C|1905
4WWW|1|YA|G|1906
*
4WWW|1|YA|C|1924
4WWW|1|YA|C|1925
4WWW|1|YA|U|1926
4WWW|1|YA|A|1927
4WWW|1|YA|A|1928
4WWW|1|YA|G|1929
4WWW|1|YA|G|1930
4WWW|1|YA|U|1931
4WWW|1|YA|A|1932
4WWW|1|YA|G|1933
*
4WWW|1|YA|C|1967
4WWW|1|YA|G|1968
4WWW|1|YA|A|1969
4WWW|1|YA|A|1970
4WWW|1|YA|U|1971
4WWW|1|YA|G|1972
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YC
- 50S ribosomal protein L2
Coloring options: