J4_4WZO_004

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WZO|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WZO_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1082

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WZO|1|14|C|268
4WZO|1|14|U|269
*
4WZO|1|14|G|370
4WZO|1|14|A|371
4WZO|1|14|G|372
4WZO|1|14|U|373
4WZO|1|14|A|374
4WZO|1|14|C|375
*
4WZO|1|14|G|399
4WZO|1|14|G|400
4WZO|1|14|A|401
4WZO|1|14|A|402
4WZO|1|14|U|403
4WZO|1|14|C|404
4WZO|1|14|U|405
4WZO|1|14|G|406
*
4WZO|1|14|U|421
4WZO|1|14|A|422
4WZO|1|14|A|423
4WZO|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28