J4_4WZO_009

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4WZO|1|14|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WZO_009 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.1227

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WZO|1|14|U|1313
4WZO|1|14|C|1314
*
4WZO|1|14|G|1338
4WZO|1|14|G|1339
4WZO|1|14|U|1340
4WZO|1|14|U|1341
4WZO|1|14|A|1342
4WZO|1|14|G|1343
*
4WZO|1|14|C|1404
4WZO|1|14|U|1405
*
4WZO|1|14|A|1597
4WZO|1|14|C|1598
4WZO|1|14|C|1599
4WZO|1|14|C|1600
4WZO|1|14|G|1601
4WZO|1|14|U|1602
4WZO|1|14|A|1603

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34