J4_4XEJ_014

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAGUAACG*UCC*GGUAG*CC

Length

18 nucleotides

Bulged bases

4XEJ|1|B16S|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|B16S|G|115
4XEJ|1|B16S|A|116
4XEJ|1|B16S|G|117
4XEJ|1|B16S|U|118
4XEJ|1|B16S|A|119
4XEJ|1|B16S|A|120
4XEJ|1|B16S|C|121
4XEJ|1|B16S|G|122
*
4XEJ|1|B16S|U|239
4XEJ|1|B16S|C|240
4XEJ|1|B16S|C|241
*
4XEJ|1|B16S|G|285
4XEJ|1|B16S|G|286
4XEJ|1|B16S|U|287
4XEJ|1|B16S|A|288
4XEJ|1|B16S|G|289
*
4XEJ|1|B16S|C|311
4XEJ|1|B16S|C|312

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS12

30S ribosomal protein S12

Chain BS16

30S ribosomal protein S16

Chain BS17

30S ribosomal protein S17