J4_4XEJ_018
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4XEJ_018 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.1111
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4XEJ|1|B23S|C|297
4XEJ|1|B23S|G|298
4XEJ|1|B23S|A|299
4XEJ|1|B23S|A|300
4XEJ|1|B23S|G|301
*
4XEJ|1|B23S|C|316
4XEJ|1|B23S|G|317
4XEJ|1|B23S|C|318
4XEJ|1|B23S|C|319
*
4XEJ|1|B23S|G|323
4XEJ|1|B23S|A|324
4XEJ|1|B23S|G|325
*
4XEJ|1|B23S|C|337
4XEJ|1|B23S|G|338
4XEJ|1|B23S|U|339
4XEJ|1|B23S|A|340
4XEJ|1|B23S|G|341
Current chains
- Chain B23S
- 23S ribosomal RNA
Nearby chains
- Chain BL04
- 50S ribosomal protein L4
- Chain BL24
- 50S ribosomal protein L24
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