J4_4XNR_001

3D structure

PDB id

4XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine

Experimental method

X-RAY DIFFRACTION

Resolution

2.21 Å

Loop

Sequence

AUAAU*AG*CC*GAUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Purine riboswitch

Broad Annotation

No text annotation

Motif group

J4_07491.1

Basepair signature

cWW-F-F-tWS-F-F-cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

4XNR|1|X|A|21
4XNR|1|X|U|22
4XNR|1|X|A|23
4XNR|1|X|A|24
4XNR|1|X|U|25
*
4XNR|1|X|A|45
4XNR|1|X|G|46
*
4XNR|1|X|C|53
4XNR|1|X|C|54
*
4XNR|1|X|G|72
4XNR|1|X|A|73
4XNR|1|X|U|74
4XNR|1|X|U|75

Current chains

Chain X

Vibrio Vulnificus Adenine Riboswitch

Nearby chains