Motif J4_07491.4 Version J4_07491.4 of this group appears in releases 4.1 to 4.15

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7	break		8		9	break		10		11		12		13	1-13	3-7	4-5	5-6	7-8	9-10
1	J4_3SKI_001	3SKI	0.8595	0	Purine riboswitch junction	A	2dG-I riboswitch aptamer	A	30	C	31	A	32	G	33	G	34	*	U	52	G	53	*	C	60	C	61	*	G	78	A	79	C	80	U	81	cWW		cSH	cWW	cWW	cWW
2	J4_3SKL_002	3SKL	0.8689	0	Purine riboswitch junction	B	2dG-I riboswitch aptamer	A	29	C	30	A	31	G	32	G	33	*	U	51	G	52	*	C	59	C	60	*	G	77	A	78	C	79	U	80	cWW		cSH	cWW	cWW	cWW
3	J4_9IWF_002	9IWF	0.4659	0	Purine riboswitch junction (H)	B	Purine riboswitch	A	7	U	8	A	9	A	10	G	11	*	C	31	G	32	*	C	39	C	40	*	G	62	G	63	C	64	U	65	cWW	tWS		cWW	cWW	cWW
4	J4_3LA5_001	3LA5	0.0949	0	Purine riboswitch junction	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
5	J4_1Y27_001	1Y27	0.0571	0	Purine riboswitch junction	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
6	J4_4XNR_001	4XNR	0.0000	0	Purine riboswitch junction	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	U	74	U	75	cWW	tWS		cWW	cWW	cWW
7	J4_1Y26_001	1Y26	0.0472	0	Purine riboswitch junction	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	U	74	U	75	cWW	tWS		cWW	cWW	cWW
8	J4_4LX6_001	4LX6	0.0743	0	Purine riboswitch junction	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
9	J4_3IVN_001	3IVN	0.0800	0	Purine riboswitch junction	A	Purine riboswitch	A	12	U	13	A	14	A	15	C	16	*	G	36	G	37	*	C	44	C	45	*	G	63	A	64	C	65	U	66	cWW	tWS		cWW	cWW	cWW
10	J4_3RKF_003	3RKF	0.0971	0	Purine riboswitch junction	C	Purine riboswitch	A	21	U	22	A	23	A	24	C	25	*	G	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUAAUAGCC*GACU	3
ACAGGUGCC*GACU	2
AUAAUAGCC*GAUU	2
AUAACGGCC*GACU	2
AUAAGCGCC*GGCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA***AC	5
CAG***AC	2
UAA***AU	2
UAA***GC	1

Release history

Release	4.1	4.2	4.3	4.4	4.5	4.6	4.7	4.8	4.9	4.10	4.11	4.12	4.13	4.14	4.15
Date	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31	2026-01-28	2026-02-25	2026-03-25	2026-04-22	2026-05-20	2026-06-17	2026-07-15	2026-08-12	2026-09-09	2026-10-07
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Purine riboswitch junction (9)
Purine riboswitch junction (H) (1)
Basepair signature: cWW-F-F-tWS-F-F-cWW-cWW-cWW
Heat map statistics: Min 0.05 | Avg 0.37 | Max 0.87

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Database contents are licensed under Creative Commons Attribution 4.0 International (CC BY 4.0). Page generated in 0.1869 s