Motif J4_07491.4 Version J4_07491.4 of this group appears in releases 4.1 to 4.1

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7	break		8		9	break		10		11		12		13	1-13	3-7	4-5	5-6	7-8	9-10
1	J4_3SKI_001	3SKI	0.8595	0	Purine riboswitch junction	A	2dG-I riboswitch aptamer	A	30	C	31	A	32	G	33	G	34	*	U	52	G	53	*	C	60	C	61	*	G	78	A	79	C	80	U	81	cWW		cSH	cWW	cWW	cWW
2	J4_3SKL_002	3SKL	0.8689	0	Purine riboswitch junction	B	2dG-I riboswitch aptamer	A	29	C	30	A	31	G	32	G	33	*	U	51	G	52	*	C	59	C	60	*	G	77	A	78	C	79	U	80	cWW		cSH	cWW	cWW	cWW
3	J4_9IWF_002	9IWF	0.4659	0	Purine riboswitch junction (H)	B	Purine riboswitch	A	7	U	8	A	9	A	10	G	11	*	C	31	G	32	*	C	39	C	40	*	G	62	G	63	C	64	U	65	cWW	tWS		cWW	cWW	cWW
4	J4_3LA5_001	3LA5	0.0949	0	Purine riboswitch junction	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
5	J4_1Y27_001	1Y27	0.0571	0	Purine riboswitch junction	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
6	J4_4XNR_001	4XNR	0.0000	0	Purine riboswitch junction	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	U	74	U	75	cWW	tWS		cWW	cWW	cWW
7	J4_1Y26_001	1Y26	0.0472	0	Purine riboswitch junction	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	U	74	U	75	cWW	tWS		cWW	cWW	cWW
8	J4_4LX6_001	4LX6	0.0743	0	Purine riboswitch junction	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW
9	J4_3IVN_001	3IVN	0.0800	0	Purine riboswitch junction	A	Purine riboswitch	A	12	U	13	A	14	A	15	C	16	*	G	36	G	37	*	C	44	C	45	*	G	63	A	64	C	65	U	66	cWW	tWS		cWW	cWW	cWW
10	J4_3RKF_003	3RKF	0.0971	0	Purine riboswitch junction	C	Purine riboswitch	A	21	U	22	A	23	A	24	C	25	*	G	45	G	46	*	C	53	C	54	*	G	72	A	73	C	74	U	75	cWW	tWS		cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUAAUAGCC*GACU	3
ACAGGUGCC*GACU	2
AUAAUAGCC*GAUU	2
AUAACGGCC*GACU	2
AUAAGCGCC*GGCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA***AC	5
CAG***AC	2
UAA***AU	2
UAA***GC	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Purine riboswitch junction (9)
Purine riboswitch junction (H) (1)
Basepair signature: cWW-F-F-tWS-F-F-cWW-cWW-cWW
Heat map statistics: Min 0.05 | Avg 0.37 | Max 0.87

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Coloring options: Nucleotide numbers

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