J4_4Y4P_001
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 4Y4P|1|1A|U|432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4Y4P_001 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.0605
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4Y4P|1|1A|C|257
4Y4P|1|1A|U|258
*
4Y4P|1|1A|G|397
4Y4P|1|1A|A|398
4Y4P|1|1A|G|399
4Y4P|1|1A|U|400
4Y4P|1|1A|A|401
4Y4P|1|1A|C|402
*
4Y4P|1|1A|G|426
4Y4P|1|1A|G|427
4Y4P|1|1A|A|428
4Y4P|1|1A|A|429
4Y4P|1|1A|U|430
4Y4P|1|1A|C|431
4Y4P|1|1A|U|432
4Y4P|1|1A|G|433
*
4Y4P|1|1A|U|448
4Y4P|1|1A|A|449
4Y4P|1|1A|A|450
4Y4P|1|1A|G|451
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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