J4_4Y4P_001

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4Y4P|1|1A|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Y4P_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0605

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4Y4P|1|1A|C|257
4Y4P|1|1A|U|258
*
4Y4P|1|1A|G|397
4Y4P|1|1A|A|398
4Y4P|1|1A|G|399
4Y4P|1|1A|U|400
4Y4P|1|1A|A|401
4Y4P|1|1A|C|402
*
4Y4P|1|1A|G|426
4Y4P|1|1A|G|427
4Y4P|1|1A|A|428
4Y4P|1|1A|A|429
4Y4P|1|1A|U|430
4Y4P|1|1A|C|431
4Y4P|1|1A|U|432
4Y4P|1|1A|G|433
*
4Y4P|1|1A|U|448
4Y4P|1|1A|A|449
4Y4P|1|1A|A|450
4Y4P|1|1A|G|451

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9