3D structure

PDB id
4YBB (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution structure of the Escherichia coli ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.1 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
4YBB|1|AA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4YBB_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.0721
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4YBB|1|AA|G|115
4YBB|1|AA|A|116
4YBB|1|AA|G|117
4YBB|1|AA|U|118
4YBB|1|AA|A|119
4YBB|1|AA|A|120
4YBB|1|AA|U|121
4YBB|1|AA|G|122
*
4YBB|1|AA|U|239
4YBB|1|AA|G|240
*
4YBB|1|AA|C|286
4YBB|1|AA|U|287
4YBB|1|AA|A|288
4YBB|1|AA|G|289
*
4YBB|1|AA|C|311
4YBB|1|AA|C|312

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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