J4_4YBB_002

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4YBB|1|AA|C|183, 4YBB|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4YBB_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0741

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4YBB|1|AA|G|142
4YBB|1|AA|A|143
4YBB|1|AA|G|144
*
4YBB|1|AA|C|178
4YBB|1|AA|A|179
4YBB|1|AA|U|180
4YBB|1|AA|A|181
4YBB|1|AA|A|182
4YBB|1|AA|C|183
4YBB|1|AA|G|184
*
4YBB|1|AA|C|193
4YBB|1|AA|C|194
4YBB|1|AA|A|195
4YBB|1|AA|A|196
4YBB|1|AA|A|197
4YBB|1|AA|G|198
*
4YBB|1|AA|U|219
4YBB|1|AA|G|220
4YBB|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20