J4_4YBB_007

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4YBB|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4YBB_007 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0865

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4YBB|1|CA|C|268
4YBB|1|CA|C|269
*
4YBB|1|CA|G|370
4YBB|1|CA|A|371
4YBB|1|CA|G|372
4YBB|1|CA|U|373
4YBB|1|CA|A|374
4YBB|1|CA|G|375
*
4YBB|1|CA|U|399
4YBB|1|CA|G|400
4YBB|1|CA|A|401
4YBB|1|CA|A|402
4YBB|1|CA|U|403
4YBB|1|CA|A|404
4YBB|1|CA|U|405
4YBB|1|CA|G|406
*
4YBB|1|CA|C|421
4YBB|1|CA|A|422
4YBB|1|CA|A|423
4YBB|1|CA|G|424

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28