J4_4YPB_015
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*CGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4YPB_015 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.1048
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4YPB|1|RA|G|2643
4YPB|1|RA|G|2644
4YPB|1|RA|G|2645
4YPB|1|RA|C|2646
*
4YPB|1|RA|G|2674
4YPB|1|RA|A|2675
4YPB|1|RA|C|2676
*
4YPB|1|RA|G|2731
4YPB|1|RA|G|2732
4YPB|1|RA|A|2733
4YPB|1|RA|A|2734
4YPB|1|RA|G|2735
*
4YPB|1|RA|C|2769
4YPB|1|RA|G|2770
4YPB|1|RA|C|2771
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RE
- 50S ribosomal protein L3
- Chain RN
- 50S ribosomal protein L13
- Chain RO
- 50S ribosomal protein L14
Coloring options: