J4_4YZV_005

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4YZV|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4YZV_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1257

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4YZV|1|RA|C|268
4YZV|1|RA|U|269
*
4YZV|1|RA|G|370
4YZV|1|RA|A|371
4YZV|1|RA|G|372
4YZV|1|RA|U|373
4YZV|1|RA|A|374
4YZV|1|RA|C|375
*
4YZV|1|RA|G|399
4YZV|1|RA|G|400
4YZV|1|RA|A|401
4YZV|1|RA|A|402
4YZV|1|RA|U|403
4YZV|1|RA|C|404
4YZV|1|RA|U|405
4YZV|1|RA|G|406
*
4YZV|1|RA|U|421
4YZV|1|RA|A|422
4YZV|1|RA|A|423
4YZV|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9