J4_4YZV_018
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4YZV|1|XV|U|8, 4YZV|1|XV|U|47, 4YZV|1|XV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4YZV_018 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.1335
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4YZV|1|XV|G|7
4YZV|1|XV|U|8
4YZV|1|XV|G|9
4YZV|1|XV|G|10
*
4YZV|1|XV|C|25
4YZV|1|XV|G|26
4YZV|1|XV|U|27
*
4YZV|1|XV|A|43
4YZV|1|XV|A|44
4YZV|1|XV|G|45
4YZV|1|XV|G|46
4YZV|1|XV|U|47
4YZV|1|XV|C|48
4YZV|1|XV|G|49
*
4YZV|1|XV|C|65
4YZV|1|XV|C|66
Current chains
- Chain XV
- P-site tRNA-fMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XM
- 30S ribosomal protein S13
- Chain Y0
- 50S ribosomal protein L27
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
Coloring options: