J4_4Z3S_005

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4Z3S|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z3S_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.052

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4Z3S|1|1A|U|1313
4Z3S|1|1A|C|1314
*
4Z3S|1|1A|G|1338
4Z3S|1|1A|G|1339
4Z3S|1|1A|U|1340
4Z3S|1|1A|U|1341
4Z3S|1|1A|A|1342
4Z3S|1|1A|G|1343
*
4Z3S|1|1A|C|1404
4Z3S|1|1A|U|1405
*
4Z3S|1|1A|A|1597
4Z3S|1|1A|C|1598
4Z3S|1|1A|C|1599
4Z3S|1|1A|C|1600
4Z3S|1|1A|G|1601
4Z3S|1|1A|U|1602
4Z3S|1|1A|A|1603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23