J4_4Z3S_030

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(7MG)UCC*GU

Length

16 nucleotides

Bulged bases

4Z3S|1|2w|4SU|8, 4Z3S|1|2w|U|47, 4Z3S|1|2w|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z3S_030 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.2281

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4Z3S|1|2w|A|7
4Z3S|1|2w|4SU|8
4Z3S|1|2w|A|9
4Z3S|1|2w|G|10
*
4Z3S|1|2w|C|25
4Z3S|1|2w|A|26
4Z3S|1|2w|G|27
*
4Z3S|1|2w|C|43
4Z3S|1|2w|G|44
4Z3S|1|2w|U|45
4Z3S|1|2w|7MG|46
4Z3S|1|2w|U|47
4Z3S|1|2w|C|48
4Z3S|1|2w|C|49
*
4Z3S|1|2w|G|65
4Z3S|1|2w|U|66

Current chains

Chain 2w

A/E-site tRNAs

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA