J4_4Z8C_001

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4Z8C|1|1A|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z8C_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0562

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4Z8C|1|1A|C|256
4Z8C|1|1A|U|257
*
4Z8C|1|1A|G|396
4Z8C|1|1A|A|397
4Z8C|1|1A|G|398
4Z8C|1|1A|U|399
4Z8C|1|1A|A|400
4Z8C|1|1A|C|401
*
4Z8C|1|1A|G|425
4Z8C|1|1A|G|426
4Z8C|1|1A|A|427
4Z8C|1|1A|A|428
4Z8C|1|1A|U|429
4Z8C|1|1A|C|430
4Z8C|1|1A|U|431
4Z8C|1|1A|G|432
*
4Z8C|1|1A|U|447
4Z8C|1|1A|A|448
4Z8C|1|1A|A|449
4Z8C|1|1A|G|450

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28