J4_4Z8C_025

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4Z8C|1|2a|C|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z8C_025 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0513

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4Z8C|1|2a|G|109
4Z8C|1|2a|A|110
4Z8C|1|2a|G|111
4Z8C|1|2a|U|112
4Z8C|1|2a|A|113
4Z8C|1|2a|A|114
4Z8C|1|2a|C|115
4Z8C|1|2a|G|116
*
4Z8C|1|2a|U|235
4Z8C|1|2a|C|236
*
4Z8C|1|2a|G|282
4Z8C|1|2a|U|283
4Z8C|1|2a|A|284
4Z8C|1|2a|G|285
*
4Z8C|1|2a|C|307
4Z8C|1|2a|C|308

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17