J4_4ZER_001

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4ZER|1|1A|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4ZER_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0586

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4ZER|1|1A|C|257
4ZER|1|1A|U|258
*
4ZER|1|1A|G|397
4ZER|1|1A|A|398
4ZER|1|1A|G|399
4ZER|1|1A|U|400
4ZER|1|1A|A|401
4ZER|1|1A|C|402
*
4ZER|1|1A|G|426
4ZER|1|1A|G|427
4ZER|1|1A|A|428
4ZER|1|1A|A|429
4ZER|1|1A|U|430
4ZER|1|1A|C|431
4ZER|1|1A|U|432
4ZER|1|1A|G|433
*
4ZER|1|1A|U|448
4ZER|1|1A|A|449
4ZER|1|1A|A|450
4ZER|1|1A|G|451

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9