J4_4ZER_018

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4ZER|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4ZER_018 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0756

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4ZER|1|2A|G|1310
4ZER|1|2A|G|1311
4ZER|1|2A|U|1312
4ZER|1|2A|U|1313
4ZER|1|2A|C|1314
*
4ZER|1|2A|G|1338
4ZER|1|2A|G|1339
4ZER|1|2A|U|1340
4ZER|1|2A|U|1341
4ZER|1|2A|A|1342
4ZER|1|2A|G|1343
*
4ZER|1|2A|C|1404
4ZER|1|2A|U|1405
*
4ZER|1|2A|A|1597
4ZER|1|2A|C|1598
4ZER|1|2A|C|1599
4ZER|1|2A|C|1600
4ZER|1|2A|G|1601
4ZER|1|2A|U|1602
4ZER|1|2A|A|1603
4ZER|1|2A|C|1604

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23