J4_4ZSN_001

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4ZSN|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4ZSN_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0522

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4ZSN|1|QA|G|115
4ZSN|1|QA|A|116
4ZSN|1|QA|G|117
4ZSN|1|QA|U|118
4ZSN|1|QA|A|119
4ZSN|1|QA|A|120
4ZSN|1|QA|C|121
4ZSN|1|QA|G|122
*
4ZSN|1|QA|U|239
4ZSN|1|QA|C|240
*
4ZSN|1|QA|G|286
4ZSN|1|QA|U|287
4ZSN|1|QA|A|288
4ZSN|1|QA|G|289
*
4ZSN|1|QA|C|311
4ZSN|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17