J4_5A2Q_006
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5A2Q|1|2|A|672, 5A2Q|1|2|A|1083, 5A2Q|1|2|C|1085, 5A2Q|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5A2Q_006 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0886
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5A2Q|1|2|A|671
5A2Q|1|2|A|672
5A2Q|1|2|G|673
*
5A2Q|1|2|C|1032
5A2Q|1|2|G|1033
5A2Q|1|2|A|1034
5A2Q|1|2|A|1035
5A2Q|1|2|A|1036
5A2Q|1|2|G|1037
*
5A2Q|1|2|C|1078
5A2Q|1|2|C|1079
5A2Q|1|2|A|1080
5A2Q|1|2|U|1081
5A2Q|1|2|A|1082
5A2Q|1|2|A|1083
5A2Q|1|2|A|1084
5A2Q|1|2|C|1085
5A2Q|1|2|G|1086
5A2Q|1|2|A|1087
5A2Q|1|2|U|1088
5A2Q|1|2|G|1089
*
5A2Q|1|2|U|1160
5A2Q|1|2|U|1161
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain L
- RIBOSOMAL PROTEIN US17
- Chain N
- RIBOSOMAL PROTEIN US15
- Chain O
- RIBOSOMAL PROTEIN US11
- Chain W
- RIBOSOMAL PROTEIN US8
- Chain X
- RIBOSOMAL PROTEIN US12
- Chain a
- RIBOSOMAL PROTEIN ES26
- Chain h
- RIBOSOMAL PROTEIN EL41
Coloring options: