J4_5AFI_001
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 5AFI|1|A|U|405||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_001 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.1594
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5AFI|1|A|C|268||||P_1
5AFI|1|A|C|269||||P_1
*
5AFI|1|A|G|370||||P_1
5AFI|1|A|A|371||||P_1
5AFI|1|A|G|372||||P_1
5AFI|1|A|U|373||||P_1
5AFI|1|A|A|374||||P_1
5AFI|1|A|G|375||||P_1
*
5AFI|1|A|U|399||||P_1
5AFI|1|A|G|400||||P_1
5AFI|1|A|A|401||||P_1
5AFI|1|A|A|402||||P_1
5AFI|1|A|U|403||||P_1
5AFI|1|A|A|404||||P_1
5AFI|1|A|U|405||||P_1
5AFI|1|A|G|406||||P_1
*
5AFI|1|A|C|421||||P_1
5AFI|1|A|A|422||||P_1
5AFI|1|A|A|423||||P_1
5AFI|1|A|G|424||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L9
- Chain X
- 50S ribosomal protein L28
Coloring options: