J4_5AFI_003
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 5AFI|1|A|G|1271||||P_1, 5AFI|1|A|A|1272||||P_1, 5AFI|1|A|U|1273||||P_1, 5AFI|1|A|U|1647||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_003 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0866
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AFI|1|A|C|1270||||P_1
5AFI|1|A|G|1271||||P_1
5AFI|1|A|A|1272||||P_1
5AFI|1|A|U|1273||||P_1
5AFI|1|A|A|1274||||P_1
5AFI|1|A|A|1275||||P_1
5AFI|1|A|A|1276||||P_1
*
5AFI|1|A|U|1294||||P_1
5AFI|1|A|C|1295||||P_1
*
5AFI|1|A|G|1645||||P_1
5AFI|1|A|C|1646||||P_1
5AFI|1|A|U|1647||||P_1
5AFI|1|A|U|1648||||P_1
*
5AFI|1|A|A|2009||||P_1
5AFI|1|A|G|2010||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
Coloring options: