J4_5AFI_006
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GG*UU*AC*GC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_006 not in the Motif Atlas
- Homologous match to J4_5J7L_024
- Geometric discrepancy: 0.0877
- The information below is about J4_5J7L_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_24280.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5AFI|1|A|G|1444||||P_1
5AFI|1|A|G|1445||||P_1
*
5AFI|1|A|U|1466||||P_1
5AFI|1|A|U|1467||||P_1
*
5AFI|1|A|A|1525||||P_1
5AFI|1|A|C|1526||||P_1
*
5AFI|1|A|G|1546||||P_1
5AFI|1|A|C|1547||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: